As the air turns crisp and leaves start to dance in vibrant hues, my kitchen transforms into a cozy haven of sweet aromas. Today, I’m excited to share my recipe for Apple Crumble Cupcakes—an effortless fall dessert that marries the comforting essence of baked apples with a delightful crumble topping. The beauty of these cupcakes lies not only in their warm, spiced flavor but also in their versatility; you can easily adapt them to be gluten-free or vegan, making them a treat everyone can enjoy. Perfect for gathering around with friends or indulging in a solo afternoon, each bite promises to wrap you in a blanket of nostalgia and sweetness. Are you ready to bring the season’s warmth into your kitchen? Let’s bake together!

Why Will You Adore These Cupcakes?
Comforting warmth fills your kitchen with the delightful aromas of autumn, making these Apple Crumble Cupcakes a perfect baking project for cozy days. Easy to whip up, they require minimal baking skills and are a fun activity for the whole family. Versatility is key—make them gluten-free or vegan without sacrificing flavor, ensuring everyone gets to savor a delicious treat. Deliciously spiced, each cupcake pairs wonderfully with a scoop of ice cream or dollop of whipped cream. Perfect for gatherings or sweet indulgences at home, you’ll find yourself reaching for this recipe again and again as the seasons change!
Apple Crumble Cupcake Ingredients
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For the Batter
• All-purpose flour – Structure; swap with whole wheat flour for added nuttiness.
• Unsalted butter (softened) – Adds moisture; can use vegan butter for a dairy-free alternative.
• Granulated sugar – Sweetness in the batter; coconut sugar is a good substitute for lower glycemic impact.
• Eggs – Binds ingredients; for a vegan option, try an egg replacer or flaxseed meal.
• Vanilla extract – Flavor enhancer; consider almond extract for a unique twist.
• Sour cream or plain yogurt – Provides moisture; use dairy-free yogurt for a vegan variation.
• Milk – Adds moisture; substitute with plant-based milk for lactose-free options.
• Baking powder – Ensures good rise; always check for freshness.
• Baking soda – Balances acidity; essential when using sour yogurt or cream.
• Salt – Enhances flavors; a must-have in baked goods. -
For the Filling
• Apples (Honeycrisp, Gala, or Fuji) – Freshness and moisture; Granny Smith adds a nice tartness.
• Granulated sugar – Sweetness in the filling; can reduce or omit to cut down on sugar.
• Lemon juice – Brightens flavor; apple cider vinegar is a suitable substitute if needed.
• Ground cinnamon – Adds warm spice; consider pumpkin pie spice for seasonal flair.
• Ground nutmeg – Deepens flavor; freshly grated nutmeg makes a noticeable difference. -
For the Crumble Topping
• Cold unsalted butter – Richness in the crumble; vegan butter can be used for a dairy-free option.
• All-purpose flour – Forms the crumble; whole wheat flour offers a nuttier taste.
• Light brown sugar – Sweetness and moisture; dark brown sugar enriches it further.
• Ground cinnamon – Adds warmth; optional spice to amp up the crumble.
• Ground nutmeg – Complements the cinnamon; adjust according to preference. -
Optional Garnishes
• Caramel sauce – An indulgent drizzle for extra richness.
• Powdered sugar – For a sweet finishing touch; sprinkle lightly before serving.
Dive into the delightful making of these Apple Crumble Cupcakes – the perfect fall dessert that draws in family and friends alike!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare the Crumble Topping
In a mixing bowl, whisk together 1 cup of all-purpose flour, ½ cup of light brown sugar, 1 teaspoon of ground cinnamon, and ¼ teaspoon of ground nutmeg. Cut in ½ cup of cold unsalted butter until the mixture resembles coarse crumbs. Once combined, refrigerate the crumble for about 30 minutes while you prepare the rest of the Apple Crumble Cupcakes, which will help in achieving that perfect crunch when baked.
Step 2: Make the Apple Filling
Peel and dice about 2 cups of your favorite apples (like Honeycrisp or Gala) and transfer them to a separate bowl. Toss the apples with 2 tablespoons of granulated sugar, 1 tablespoon of lemon juice, 1 teaspoon of ground cinnamon, and ¼ teaspoon of ground nutmeg. Set the mixture aside for about 10 minutes to allow the flavors to meld, creating a fragrant filling that will add moisture and sweetness to your cupcakes.
Step 3: Prepare the Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large bowl, whisk together 1 ½ cups of flour, 1 teaspoon of baking powder, ½ teaspoon of baking soda, and ¼ teaspoon of salt. In another bowl, cream together ½ cup of softened unsalted butter and 1 cup of granulated sugar until light and fluffy. Mix in 2 eggs and 1 teaspoon of vanilla extract, then alternately add in the dry ingredients and ½ cup of sour cream until just combined for the Apple Crumble Cupcakes.
Step 4: Assemble and Bake
Scoop a generous tablespoon of cupcake batter into each lined muffin cup, filling them about halfway. Layer on your prepared apple filling, followed by another scoop of batter to fill each cup to two-thirds full. Finally, sprinkle the chilled crumble topping over each cupcake. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean, signaling that your Apple Crumble Cupcakes are ready to shine.
Step 5: Garnish (Optional)
Once baked, let your cupcakes cool in the pan for about 10 minutes before transferring them to a wire rack to cool completely. To elevate your Apple Crumble Cupcakes, drizzle with warm caramel sauce and sprinkle with powdered sugar just before serving for an enticing finish. Enjoy the delightful combination of flavors and textures that these autumn-inspired treats bring to your table!

Storage Tips for Apple Crumble Cupcakes
Room Temperature: Store your Apple Crumble Cupcakes in an airtight container at room temperature for up to 3 days to maintain their moistness and flavor.
Fridge: If you prefer a longer shelf life, transfer the cupcakes to the fridge, where they can last up to 5 days. Just remember to let them come to room temperature before enjoying.
Freezer: For longer storage, wrap each cupcake tightly in plastic wrap and place them in a freezer-safe bag; they’ll stay delicious for up to 1 month.
Reheating: To enjoy cupcakes from the freezer, thaw them overnight in the fridge, then warm them in the microwave for about 15-20 seconds for that fresh-out-of-the-oven taste!
Make Ahead Options
These Apple Crumble Cupcakes are perfect for meal prep, allowing you to enjoy the comforting flavors of fall without last-minute stress! You can prepare the crumble topping and apple filling up to 24 hours in advance; simply store them separately in airtight containers in the refrigerator. For best results, assemble the cupcakes just before baking to keep the crumble crisp and the batter fresh. When you’re ready to bake, scoop the batter into the lined muffin tin, layer with the apple filling, and sprinkle the crumble topping before baking as directed. This way, you’ll have delightful, homemade treats with minimal effort on busy days!
What to Serve with Apple Crumble Cupcakes?
There’s nothing quite like the fusion of sweet and cozy flavors that can elevate your autumn experience.
- Vanilla Ice Cream: A classic pairing that complements the warmth; its creamy texture contrasts beautifully with the moist cupcakes.
- Whipped Cream: Light and airy, a dollop on top adds just the right amount of sweetness and creaminess, enhancing the cupcake’s flavors.
- Caramel Sauce: Drizzled on top or served on the side, this rich addition intensifies the warmth of the spices and adds a luxurious touch.
- Fresh Apple Slices: Crisp and juicy, they refresh the palate, balancing the sweetness with their natural tartness; sprinkle with cinnamon for extra flair.
- Coffee or Spiced Chai Latte: A warm cup of either can perfectly accentuate the flavors; the spices harmonize with the cupcake and create a heartwarming experience.
- Nutty Granola: Serve as a crunchy side; its earthy flavor pairs well, and the added texture complements the soft crumb of the cupcake.
- Sparkling Apple Cider: This bubbly drink enhances the apple flavor, providing a refreshing balance to the richness of the dessert.
- Pumpkin Butter: Spread a little on top for a seasonal twist; its spiced richness will deepen the overall flavor profile while transporting you to autumn.
- Mini Cheesecakes: Serve as a delightful contrast; the creamy texture can enhance the experience of this sweet, spiced Apple Crumble.
Apple Crumble Cupcakes Variations
Feel free to get creative and customize these wonderful cupcakes; they’re versatile enough to satisfy every palate!
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Gluten-Free: Substitute all-purpose flour with a gluten-free flour blend for a delicious and safe dessert option.
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Vegan: Replace eggs with flaxseed meal or a store-bought egg replacer, and use dairy-free yogurt and plant-based butter for a fully vegan version.
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Nuts Galore: Add chopped walnuts or pecans to the crumble for an enticing crunch that pairs beautifully with the tender apples.
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Spice It Up: Boost the flavor by incorporating ground ginger or allspice into the filling, making it extra cozy for fall. These spices will dance beautifully together, adding depth to every bite.
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Cheesecake Twist: Swirl a cream cheese or dairy-free cream cheese mixture into the batter before adding the apple filling for rich, cheesecake-like cupcakes.
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Mini Delights: Make mini cupcakes for bite-sized treats that are perfect for parties or lunchboxes. Everyone loves a little cupcake!
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Fruity Mix: Experiment with different fruits like pears or berries to create a unique flavor profile that still gives the comfort of an apple crumble.
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Caramel Drizzle: Drizzle warm caramel sauce over the top before serving for an indulgent twist that will make your taste buds sing. Pair it with a scoop of vanilla ice cream for a divine experience.
Remember, these Apple Crumble Cupcakes are a reflective canvas—embrace the chance to infuse your favorite flavors and dietary preferences to create a treat that’s just right for you! Looking for more inspiration? Check out our guide on baking with seasonal fruits or explore the joys of gluten-free baking to uncover even more mouthwatering possibilities!
Expert Tips for Apple Crumble Cupcakes
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Quality Ingredients: Use fresh, high-quality apples to maximize flavor in your Apple Crumble Cupcakes. Organic options can enhance taste significantly.
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Chill the Butter: For a crisp crumble, ensure your unsalted butter is cold when mixing. This helps achieve that delightful texture.
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Mixing Matters: Avoid overmixing the batter. Gently combine until just incorporated to keep your cupcakes light and airy.
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Cool Before Garnishing: Let the cupcakes cool completely before adding caramel sauce or powdered sugar; otherwise, you’ll risk melting the toppings.
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Adjust Sweetness: Feel free to reduce the sugar in both the filling and batter to suit your taste. The apples provide natural sweetness!
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Storing Tips: Keep uneaten cupcakes in an airtight container at room temperature for up to three days. You can freeze them for later enjoyment, too!

Apple Crumble Cupcakes Recipe FAQs
How do I select the best apples for my cupcakes?
Absolutely! For the best flavor and texture, I recommend using Honeycrisp, Gala, or Fuji apples, as they offer a nice balance of sweetness and moisture. If you enjoy a tart element, Granny Smith apples are a fantastic choice. Look for firm apples without dark spots or bruises to ensure freshness.
What’s the best way to store Apple Crumble Cupcakes?
To keep your cupcakes fresh, store them in an airtight container at room temperature for up to 3 days. If you want them to last longer, placing them in the refrigerator will prolong their shelf life to about 5 days. Just make sure to bring them back to room temperature before enjoying for the best taste!
Can I freeze my Apple Crumble Cupcakes?
You can definitely freeze your cupcakes! First, allow them to cool completely, then wrap each cupcake tightly in plastic wrap and place them in a freezer-safe bag. They can last up to 1 month this way. To enjoy, simply thaw them overnight in the fridge and reheat in the microwave for about 15-20 seconds for that delightful homemade warmth!
What should I do if my cupcakes turn out dry?
Very! If your cupcakes seem dry, ensure you’re measuring your flour correctly—measuring too much can lead to dense cupcakes. Using room temperature eggs is also important for the batter’s moisture. Try incorporating an extra tablespoon of sour cream or yogurt next time to enhance the moisture without sacrificing flavor!
Are there any dietary adaptations for these cupcakes?
The more the merrier! You can easily make these Apple Crumble Cupcakes gluten-free by substituting all-purpose flour with a gluten-free blend. For a vegan option, use vegan butter, a flaxseed meal as an egg replacer, and dairy-free yogurt. These adaptations maintain the delicious flavor and texture everyone will love!

Discover Irresistible Apple Crumble Cupcakes for Cozy Fall Days
Ingredients
Equipment
Method
- Prepare the Crumble Topping: In a mixing bowl, whisk together 1 cup of all-purpose flour, ½ cup of light brown sugar, 1 teaspoon of ground cinnamon, and ¼ teaspoon of ground nutmeg. Cut in ½ cup of cold unsalted butter until the mixture resembles coarse crumbs. Refrigerate for about 30 minutes.
- Make the Apple Filling: Peel and dice about 2 cups of your favorite apples. Toss them with 2 tablespoons of granulated sugar, 1 tablespoon of lemon juice, 1 teaspoon of ground cinnamon, and ¼ teaspoon of ground nutmeg. Set aside for about 10 minutes.
- Prepare the Cupcake Batter: Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large bowl, whisk together 1 ½ cups of flour, 1 teaspoon of baking powder, ½ teaspoon of baking soda, and ¼ teaspoon of salt. In another bowl, cream together ½ cup of softened unsalted butter and 1 cup of granulated sugar. Mix in 2 eggs and 1 teaspoon of vanilla extract, then alternately add in the dry ingredients and ½ cup of sour cream until just combined.
- Assemble and Bake: Scoop a generous tablespoon of cupcake batter into each lined muffin cup. Layer on your prepared apple filling, followed by another scoop of batter. Sprinkle the chilled crumble topping over each cupcake. Bake for 20-25 minutes, or until a toothpick comes out clean.
- Garnish (Optional): Let your cupcakes cool in the pan for about 10 minutes before transferring them to a wire rack. Drizzle with warm caramel sauce and sprinkle with powdered sugar before serving.

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