As I stood in my kitchen, the scent of baking bread wafted through the air, instantly reminding me of those cozy family gatherings filled with laughter. That’s when I decided to whip up a batch of Healthy Sourdough Discard Kolaches, those delightful Czech pastries that seem to bring everyone together. Not only are these kolaches an excellent way to put sourdough discard to use, but they also offer a healthier twist on a classic treat! With a light and flaky texture complemented by a luscious cream cheese filling, they are perfect for breakfast or brunch. Plus, who could resist the idea of impressing friends and family with a homemade pastry that minimises waste? Join me as I share the secrets to creating these tender, satisfying delights—what unique filling will you choose to surprise your loved ones?

Why are Sourdough Discard Kolaches special?
Uniqueness: These kolaches are not your average pastries; they spotlight sourdough discard, transforming what would be waste into something delicious.
Healthy Twist: With the use of ancient grains, you’ll be serving a delightful treat that’s better for you and your loved ones.
Flaky Goodness: The light, tender texture of these kolaches will have everyone reminiscing about family gatherings without the guilt of traditional pastries.
Crowd-Pleasing Appeal: Perfect for brunch or breakfast, these kolaches are sure to impress guests, making them a must-try for your next gathering.
Versatile Options: Feel free to experiment with various fillings; whether you stick with classic cream cheese or get adventurous with fruits, each bite is an opportunity for creativity.
Try these out and don’t forget to check out my guide on healthy baking substitutions for more ways to make your treats a little kinder!
Sourdough Discard Kolaches Ingredients
For the Dough
- All-Purpose Flour – This forms the backbone of the dough; you can substitute with einkorn flour for a nutty flavor.
- Einkorn Flour – Adds a unique depth of flavor; regular all-purpose flour can work, but moisture may need adjusting.
- Spelt Flour – Enhances the dough with a mild sweetness; whole wheat flour can be used if necessary.
- Milk – Provides hydration and richness; any type works well here, so use your favorite!
- Melted Butter – Brings out the tenderness; feel free to use margarine for a dairy-free option.
- Sugar – Sweetens the dough; swapping for brown sugar gives a richer flavor.
- Eggs – Moisture and binding agent; aquafaba is a fantastic vegan substitute.
- Sourdough Starter – Essential for that beloved tangy flavor; it’s what makes these kolaches authentically sourdough!
For the Filling
- Cream Cheese – The star of the filling; make sure it’s at room temperature for easy mixing.
- Vanilla Extract – Adds a delightful flavor to the cream cheese; almond extract can be an exciting alternative.
- Lemon Juice – Brightens the filling flavor; feel free to adjust to your personal taste!
For the Streusel Topping
- Flour – Provides texture and sweetness; any type of flour will work here for a yummy topping!
- Butter – Helps bind the streusel ingredients together; it’s best if it’s cold when mixed in.
For the Egg Wash
- Egg – Gives a beautiful glossy finish to your baked kolaches, making them look bakery-fresh!
Step‑by‑Step Instructions for Sourdough Discard Kolaches
Step 1: Dough Preparation
In a stand mixer, combine 3 cups of all-purpose flour and 1 teaspoon of salt. In a separate bowl, whisk together 1 cup of milk, 1/4 cup of melted butter, 1/4 cup of sugar, 1 large egg, and 1 cup of sourdough starter until smooth. Gradually pour this mixture into the flour and mix until a shaggy dough forms, ensuring no dry flour remains visible.
Step 2: Kneading
Knead the dough on medium-low speed for 8-10 minutes, until it’s smooth and elastic. If the dough is too sticky, gradually add more flour, one tablespoon at a time, until it pulls away from the sides of the bowl. The dough should have a sticky but manageable consistency, perfect for shaping later.
Step 3: First Rise
Transfer the dough to a lightly greased bowl, covering it with a clean kitchen towel or plastic wrap. Let it rise at room temperature for 1 hour, until doubled in size. After the initial rise, gently punch down the dough, cover it again, and refrigerate overnight to enhance flavor and texture.
Step 4: Filling Preparation
While the dough is chilling, prepare the cream cheese filling by beating together 8 oz of room temperature cream cheese, 1/4 cup of sugar, 2 tablespoons of flour, 1 teaspoon of vanilla extract, and a pinch of salt in a mixing bowl until smooth. Adjust the lemon juice of your choice to taste, then refrigerate the filling until you’re ready to use it.
Step 5: Streusel Topping
For the streusel topping, mix 1/2 cup of flour and 1/4 cup of sugar in a bowl. Cut in 1/4 cup of cold butter using a fork or pastry cutter until you achieve coarse crumbs. Refrigerate the streusel mixture to maintain its crumbly texture until you’re ready to sprinkle it over the kolaches.
Step 6: Shaping
After refrigerating, remove the dough from the fridge and punch it down gently. Shape it into a log and cut it into 9 equal pieces. Roll each piece into a ball, then place the balls on a lined baking sheet, covering them lightly with a towel. Allow them to rise for about 2-3 hours, until they have doubled in size.
Step 7: Oven Preparation
Preheat your oven to 350°F (175°C). While the oven heats, grease a measuring cup with butter or oil to use for making indentations in the dough. Prepare for baking by ensuring your baking sheet is ready and lined for easy cleanup after your Sourdough Discard Kolaches are done.
Step 8: Filling and Topping
Once the dough balls have risen, gently indent each ball using the greased measuring cup to create a well. Spoon the cream cheese filling into each well, being careful not to overfill. Brush the tops of the kolaches with an egg wash made from 1 beaten egg, then sprinkle generously with the prepared streusel topping.
Step 9: Baking
Place the baking sheet in the preheated oven and bake the kolaches for 20-25 minutes, or until they are golden brown on top. Rotate the sheet halfway through to ensure even browning. The pastries should puff up and take on a lovely, warm color indicating they’ve reached perfect doneness.
Step 10: Cooling
After removing the Sourdough Discard Kolaches from the oven, allow them to cool on a wire rack for about 20 minutes. This cooling time helps the filling set, making them easier to handle. Serve warm and enjoy the cozy, delicious flavors of homemade goodness!

What to Serve with Healthy Sourdough Discard Kolaches
Imagine a delightful breakfast table filled with warmth, laughter, and the sweet aroma of freshly baked pastries mingling with vibrant, fresh ingredients.
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Fresh Berries: The juicy burst of strawberries or blueberries offers a refreshing contrast to the creamy filling, adding a bright color and natural sweetness.
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Scrambled Eggs: Fluffy, buttery scrambled eggs make a hearty pairing, balancing the sweetness of the kolaches while adding protein to your meal.
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Honey Butter: The heavenly blend of sweet honey and creamy butter drizzled over warm kolaches elevates their flavor, enticing everyone to indulge just a little more.
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Greek Yogurt Parfait: Layer creamy yogurt with honey and granola, showcasing a healthy yet rich option that complements the kolaches beautifully for a balanced breakfast spread.
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Fruit Preserves: A dollop of apricot or raspberry preserves on the side enriches the flavors of the kolaches, inviting guests to dip and savor every bite.
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Sparkling Water: The effervescence of a chilled sparkling water or lemonade cleanses the palate, making for a refreshing drink that pairs wonderfully with your sweet pastries.
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Coffee or Tea: Serve with a warm cup of rich coffee or fragrant tea to enhance the breakfast experience—nothing beats the combination of pastries and your favorite morning beverage.
Storage Tips for Sourdough Discard Kolaches
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Room Temperature: Keep freshly baked kolaches in an airtight container for up to 2 days at room temperature to maintain their softness and flavor.
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Fridge: To extend freshness, store the kolaches in the fridge for up to 4 days. Make sure they’re tightly wrapped to prevent them from drying out.
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Freezer: For longer storage, freeze kolaches in an airtight container or freezer bag for up to 3 months. Thaw at room temperature before reheating.
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Reheating: To enjoy leftover kolaches, reheat them in the oven at 350°F (175°C) for about 10-15 minutes until warmed through, restoring their flaky texture.
Sourdough Discard Kolaches: Delicious Variations
Feel free to get creative and customize these delightful kolaches with the following suggestions that will take them to a new level of deliciousness!
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Dairy-Free: Substitute cream cheese with a non-dairy cream cheese for a vegan-friendly filling, making it accessible for everyone at the table. Enjoy the same creamy bliss without the dairy!
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Fruit-Filled: Swap out the cream cheese filling for fresh fruit preserves or a filling made with seasonal fruits like berries or peaches for a burst of fruity flavor. Each bite will taste like a sweet summer day!
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Nutty Twist: Add chopped nuts, like walnuts or almonds, to the cream cheese filling to introduce a delightful crunch, balancing out the soft texture of the kolaches. The added flavor and texture will surprise your taste buds!
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Whole Grain Upgrade: Experiment with using whole wheat or spelt flour in place of the all-purpose flour to bolster the health factor. Whole grains add a rustic flavor that pairs beautifully with the sweetness of the kolaches.
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Flavored Cream Cheese: Mix in flavored cream cheese like chive or herb-infused for a savory twist, perfect for a brunch option that stands out. This unexpected variation can leave guests raving about your culinary creativity!
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Cinnamon Sugar Streusel: For a warm, cozy flavor, add cinnamon to your streusel topping for an aromatic twist that will make your kitchen smell divine while baking. The sweetness combined with a hint of spice is an irresistible combo!
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Extra Sweetness: Consider mixing brown sugar with the filling for a richer flavor or drizzling a little honey over the baked kolaches before serving. This small touch adds a luscious sweetness that will make you swoon!
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Spicy Kick: Add a pinch of cayenne or black pepper to your cream cheese mixture for a surprising spicy note that pairs wonderfully with the sweetness. A little heat goes a long way in elevating the traditional filling!
For more delicious ideas, check out my guide on experimenting with kolache fillings for even more inspiration! Get ready to surprise and delight your loved ones with these delightful twists!
Make Ahead Options
These Healthy Sourdough Discard Kolaches are a fantastic choice for busy home cooks looking to save time during hectic mornings! You can prepare the dough up to 24 hours in advance by following the first rise, then refrigerating it overnight. The cream cheese filling can also be made and stored in the refrigerator for up to 3 days; just ensure it’s covered tightly to maintain its creamy texture. When you’re ready to serve, take the dough out, shape it, and let it rise until doubled—this gives you that tender, flaky quality just as if they were freshly made. With these prep ahead options, you can enjoy delicious, warm kolaches with minimal effort on busy days!
Expert Tips for Sourdough Discard Kolaches
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Room Temperature Cream Cheese: Ensure your cream cheese is at room temperature to avoid lumps in the filling; this creates a smooth and silky texture for your kolaches.
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Flour Management: Use just enough flour to handle the sticky dough; adding too much can result in tough kolaches. Aim for a balance to maintain their tender texture.
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Rising Time: Be patient with the rising process; sourdough discard kolaches require longer than typical yeast doughs for a fluffy final product. Don’t rush it!
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Deep Wells: Create deep indentations in the dough before filling; this prevents any creamy filling from spilling over the sides during baking.
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Experiment with Fillings: Feel free to get creative with various fillings; different cheeses, fruits, or jams can transform your sourdough discard kolaches into a delightful surprise for every bite.

Sourdough Discard Kolaches Recipe FAQs
What type of sourdough discard should I use?
Absolutely! Any active sourdough starter that has been fed within the last week works best for this recipe. Just make sure it’s bubbly and has a pleasant tang. This ensures that your kolaches will have that wonderful sourdough flavor. Avoid using discard that smells off or has dark spots, as this indicates it may not be fresh.
How should I store leftover kolaches?
For the best taste, keep your freshly baked kolaches in an airtight container at room temperature for 2 days. If you need to store them for a longer period, pop them in the fridge, where they’ll stay fresh for about 4 days. Just wrap them tightly to avoid drying out.
Can I freeze my sourdough discard kolaches?
Yes, they freeze beautifully! Wrap them individually in plastic wrap, then place them in an airtight container or freezer bag. They can stay frozen for up to 3 months. To enjoy, simply thaw them at room temperature for a couple of hours and reheat in the oven at 350°F (175°C) for about 10-15 minutes, restoring their flaky goodness.
What if my dough is too sticky?
If your dough is too sticky to handle, don’t worry! Gradually sprinkle in a little more flour—about one tablespoon at a time—while kneading until it reaches a smooth but still slightly tacky consistency. Keep in mind that every flour behaves differently, so it’s key to adjust while mixing to achieve that perfect texture.
Can I use different fillings for my kolaches?
Very much so! Feel free to get creative with the fillings. You can use fruit preserves, other cheeses, or even nut butters! Just remember to adjust the proportions slightly to accommodate the moisture level in whatever filling you choose. Each variation can bring a delightful twist to your sourdough discard kolaches!
Are these kolaches pet-friendly?
Not at all! These sourdough discard kolaches contain ingredients like sugar and cream cheese that aren’t safe for pets. Make sure to keep them away from curious furry friends. If you’re looking for a pet-friendly treat, consider making plain, unsweetened baked goods specifically for them instead.

Sourdough Discard Kolaches: Indulge in Flaky, Creamy Bliss
Ingredients
Equipment
Method
- In a stand mixer, combine 3 cups of all-purpose flour and 1 teaspoon of salt. In a separate bowl, whisk together 1 cup of milk, 1/4 cup of melted butter, 1/4 cup of sugar, 1 large egg, and 1 cup of sourdough starter until smooth. Gradually pour this mixture into the flour and mix until a shaggy dough forms.
- Knead the dough on medium-low speed for 8-10 minutes until smooth and elastic. If the dough is too sticky, gradually add more flour until it pulls away from the sides of the bowl.
- Transfer the dough to a lightly greased bowl, cover it, and let it rise at room temperature for 1 hour. After the initial rise, punch down the dough, cover again, and refrigerate overnight.
- Prepare the cream cheese filling by beating together 8 oz of cream cheese, 1/4 cup of sugar, 2 tablespoons of flour, 1 teaspoon of vanilla extract, and a pinch of salt until smooth. Adjust the lemon juice to taste and refrigerate.
- For the streusel topping, mix 1/2 cup of flour and 1/4 cup of sugar. Cut in 1/4 cup of cold butter until you achieve coarse crumbs and refrigerate.
- After refrigerating the dough, punch it down, shape into a log, and cut into 9 equal pieces. Roll each into a ball and place on a lined baking sheet, covering lightly. Allow to rise for 2-3 hours.
- Preheat your oven to 350°F (175°C). Grease a measuring cup to create indentations in the dough.
- Gently indent each risen ball and spoon in the cream cheese filling. Brush with a beaten egg wash and sprinkle streusel topping.
- Bake for 20-25 minutes until golden brown, rotating halfway through for even browning.
- Allow to cool on a wire rack for about 20 minutes before serving.

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